Ion Model¶

class ScaLBL_IonModel¶

#include <IonModel.h>

Public Functions

double CalIonDenConvergence(vector<double> &ci_avg_previous)¶

void Checkpoint()¶

void Create()¶

void DummyElectricField()¶

void DummyFluidVelocity()¶

void getIonConcentration(DoubleArray &IonConcentration, const size_t ic)¶

void getIonConcentration_debug(int timestep)¶

void getIonFluxAdvective(DoubleArray &IonFlux_x, DoubleArray &IonFlux_y, DoubleArray &IonFlux_z, const size_t ic)¶

void getIonFluxAdvective_debug(int timestep)¶

void getIonFluxDiffusive(DoubleArray &IonFlux_x, DoubleArray &IonFlux_y, DoubleArray &IonFlux_z, const size_t ic)¶

void getIonFluxDiffusive_debug(int timestep)¶

void getIonFluxElectrical(DoubleArray &IonFlux_x, DoubleArray &IonFlux_y, DoubleArray &IonFlux_z, const size_t ic)¶

void getIonFluxElectrical_debug(int timestep)¶

void Initialize()¶

void ReadInput()¶

void ReadParams(string filename, vector<int> &num_iter)¶

void ReadParams(string filename)¶

void ReadParams(std::shared_ptr<Database> db0)¶

void Run(double *Velocity, double *ElectricField)¶

void RunMembrane(double *Velocity, double *ElectricField, double *Psi)¶

ScaLBL_IonModel(int RANK, int NP, const Utilities::MPI &COMM)¶

void SetDomain()¶

void SetMembrane()¶

~ScaLBL_IonModel()¶

Public Members

vector<int> BoundaryConditionInlet¶

vector<int> BoundaryConditionOutlet¶

int BoundaryConditionSolid¶

double *ChargeDensity¶

double *Ci¶

vector<double> Cin¶

vector<double> Cout¶

std::shared_ptr<Database> db¶

DoubleArray Distance¶

std::shared_ptr<Domain> Dm¶

std::shared_ptr<Database> domain_db¶

int *dvcMap¶

double *ElectricFieldDummy¶

double electron_charge¶

double Ex_dummy¶

double Ey_dummy¶

double Ez_dummy¶

double *FluidVelocityDummy¶

double fluidVelx_dummy¶

double fluidVely_dummy¶

double fluidVelz_dummy¶

double *FluxAdvective¶

double *FluxDiffusive¶

double *FluxElectrical¶

double *fq¶

double h¶

std::shared_ptr<Database> ion_db¶

vector<double> IonConcentration¶

vector<double> IonDiffusivity¶

std::shared_ptr<Membrane> IonMembrane¶

double *IonSolid¶

vector<int> IonValence¶

double k2_inv¶

double kb¶

double Lx¶

double Ly¶

double Lz¶

IntArray Map¶

std::shared_ptr<Domain> Mask¶

vector<double> MassFractionIn¶

vector<double> MassFractionOut¶

std::shared_ptr<Database> membrane_db¶

int MembraneCount¶

DoubleArray MembraneDistance¶

vector<double> MembraneIonConcentration¶

int N¶

int *NeighborList¶

int Np¶

int nprocs¶

int nprocx¶

int nprocy¶

int nprocz¶

size_t number_ion_species¶

int Nx¶

int Ny¶

int Nz¶

int rank¶

bool Restart¶

std::shared_ptr<ScaLBL_Communicator> ScaLBL_Comm¶

double T¶

vector<double> tau¶

vector<double> ThresholdMassFractionIn¶

vector<double> ThresholdMassFractionOut¶

vector<double> ThresholdVoltage¶

vector<double> time_conv¶

int timestep¶

vector<int> timestepMax¶

double tolerance¶

bool USE_MEMBRANE¶

double Vt¶

Private Functions

void AssignIonConcentration_FromFile(double *Ci, const vector<std::string> &File_ion, int ic)¶

void AssignIonConcentrationMembrane(double *Ci, int ic)¶

void AssignSolidBoundary(double *ion_solid)¶

void IonConcentration_LB_to_Phys(DoubleArray &Den_reg)¶

void IonFlux_LB_to_Phys(DoubleArray &Den_reg, const size_t ic)¶

void LoadParams(std::shared_ptr<Database> db0)¶

Private Members

Utilities::MPI comm¶

char LocalRankFilename[40]¶

char LocalRankString[8]¶

char LocalRestartFile[40]¶

char OutputFilename[200]¶